[CryptoNet: a network by integration of all data-type-specific networks (CN-CC,CN-CX,CN-DC,CN-GN,CN-PG,HS-HT,HS-LC,SC-CC,SC-CX,SC-DC,SC-GT,SC-HT,SC-LC,SC-TS)]
Integrated network#genes#links
CryptoNet v15649 genes156506 links

[Gold standard data of positive gene functional associations]
Gold standard set#genes#links
CryptoNet v1-GS1414 genes43524 links

[Integrated networks for each of data types]
Data type#linksDescription
CN-CC23217Inferred links by co-citation of two genes across 609 pubmed Medline articles for C. neoformans biology
CN-CX288517Inferred links by co-expression pattern of two C. neoformans genes (based on high-dimensional gene expression data)
CN-DC7437Inferred links by co-occurrence of protein domains between two C. neoformans coding genes
CN-GN36495Inferred links by similar genomic context of bacterial orthologs of two C. neoformans genes
CN-PG36514Inferred links by similar phylogenetic profiles between two C. neoformans genes
HS-HT5379Associalogs by high-throughput human protein-protein interactions
HS-LC14619Associalogs by small/medium-scale human protein-protein interactions (collected from protein-protein interaction data bases)
SC-CC28539Associalogs by co-citation of two genes across 46,111 pubmed Medline articles for yeast biology
SC-CX170489Associalogs by co-expression pattern of two yeast genes (based on high-dimensional gene expression data)
SC-DC6731Associalogs by co-occurrence of protein domains between two yeast coding genes
SC-GT40891Associalogs by similar profiles of yeast genetic interaction partners
SC-HT64617Associalogs by high-throughput yeast protein-protein interactions
SC-LC25928Associalogs by small/medium-scale yeast protein-protein interactions (collected from protein-protein interaction data bases)
SC-TS1395Associalogs by protein ineteractions from yeast tertiary structures of complexes


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