| DB/data set |
Reference (PMID) |
Edge list download |
#link |
Experiment description |
| GSE7 |
11027315 |
download |
36200 |
Tryptophan metabolism response in E. coli |
| GSE1106 |
15129285 |
download |
30071 |
aerobic knock-out |
| GSE1107 |
18828895 |
download |
26500 |
anaerobic knock-out |
| GSE1730 |
15535862 |
download |
5096 |
mRNA abundance from wild type |
| GSE1780 |
15817786 |
download |
8892 |
The expression profile of Escherichia coli K-12 in response to minimal, optimal and excess copper concentrations |
| GSE2999 |
NA |
download |
27495 |
Cisplatin-induced gene expression in DNA adenine methyltransferase (dam) and mismatch repair deficient E. coli |
| GSE3250 |
16141204 |
download |
12037 |
BW25113 glucose to acetate transition |
| GSE3591 |
17921306 |
download |
8972 |
A reassesment of the FNR regulon and the effects of nitrate,nitrite, narXL and narQP |
| GSE3905 |
17222132 |
download |
7002 |
Temporal Biofilm Expression of E. coli K-12 after 4, 7, 15, and 24 hr |
| GSE3977 |
14981237 |
download |
19197 |
Comparative Transcript Abundance in E. Coli Degradosome Mutants and their Parental Strains |
| GSE4363 |
16626502 |
download |
19004 |
Recovery from stationary phase in LB + 0.2 % glucose |
| GSE4408 |
17009874 |
download |
11070 |
Transcriptional consequences of DNA gyrase inhibition |
| GSE4511 |
15601715 |
download |
12005 |
pH Regulates Genes for Flagellar Motility, Catabolism, and Oxidative Stress in Escherichia coli K-12 |
| GSE6033 |
20863252 |
download |
15203 |
Reference Design time-course |
| GSE6836 |
17214507 |
download |
14450 |
Large-Scale Mapping and Validation of E. coli Transcriptional Regulation from a Compendium of Expression Profiles |
| GSE7326 |
19304752 |
download |
5241 |
Expression profiles during cell death programmed by a restriction-modification system in E. coli |
| GSE7398 |
17768236 |
download |
12927 |
Expression data from E. coli covering four phases of growth in Fis KO and WT (Fis+) strains |
| GSE7477 |
NA |
download |
19717 |
Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium |
| GSE7573 |
17494765 |
download |
13948 |
Identification of NO Response Network in E. coli |
| GSE7885 |
17979199 |
download |
25060 |
Gene expression of E. coli MG1655 wild type and rpoS knock-out strains |
| GSE9923 |
18528414 |
download |
17890 |
Indole cell signaling occurs primarily at low temperatures in Escherichia coli |
| GSE10158 |
18192383 |
download |
7079 |
Expression of Escherichia coli treated with cefsulodin and mecillinam, alone and in combination |
| GSE10855 |
18467556 |
download |
23988 |
MG1655 temperature O2 response normalized data Tavazoie |
| GSE11041 |
19767843 |
download |
19800 |
Overlapping and unique responses of E. coli to adverse conditions |
| GSE11087 |
18430135 |
download |
10970 |
E. coli Isoleucine starvation and stringent response network |
| GSE11183 |
19194530 |
download |
13890 |
Identification of the Escherichia coli HU regulon |
| GSE12797 |
18843507 |
download |
13907 |
Control of RpoS in global gene expression of Escherichia coli in minimal media |
| GSE12877 |
19091747 |
download |
12032 |
Transcriptional profiling of Escherichia coli after addition of CO-RMs to aerobically growing cells |
| GSE13048 |
19091747 |
download |
18914 |
Transcriptional profiling of Escherichia coli |
| GSE13418 |
19376922 |
download |
30611 |
Gene expression of E. coli MG1655 at attachment, colony formation and maturation during biofilm formation |
| GSE13444 |
19536200 |
download |
38923 |
Identification of isobutanol response network of E. coli |
| GSE13666 |
19798444 |
download |
24763 |
Evolution of E. coli transcriptome under osmotic-stress with and without RpoS |
| GSE15405 |
20008510 |
download |
90421 |
Expression data from E. coli cells overexpressing GraL for long periods of time |
| GSE15406 |
20008510 |
download |
41684 |
Expression data from E. coli cells overexpressing GraL for short and long periods of time |
| GSE15409 |
19366454 |
download |
14828 |
Amino acid/Nucleotide perturbation in Escherichia coli |
| GSE15500 |
21057108 |
download |
10003 |
Analysis of differences in gene expression due to small adaptive mutations in RNA polymerase B' subunit (rpoC) |
| GSE16973 |
20118358 |
download |
3492 |
Functional Genomic Study of Exogenous n-Butanol Stress in Escherichia coli |
| GSE17276 |
19893610 |
download |
39945 |
Transcriptional profiling of an evolved polymorphism in E. coli |
| GSE17584 |
19703305 |
download |
12225 |
Transcriptional effects of CRP* expression in Escherichia coli |
| GSE19742 |
20478253 |
download |
13966 |
Expression profiling of E.coli K-12 wild-type vs. delta dksA cells upon amino acid starvation |
| GSE20305 |
20461071 |
download |
31877 |
Time resolved response of E. coli to 5 different stress conditions |
| GSE21839 |
20709841 |
download |
16926 |
Transcriptome analysis of wild type E. coli (K-12 MG1655) comparing to mutant E. coli strain (ECOM4) under aerobic and anaerobic conditions |
| GSE21869 |
21785135 |
download |
15320 |
Expression profiles of evolved clones isolated at various stages during adaptive experimental evolution of E. coli |
| GSE26187 |
22016571 |
download |
13001 |
Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit |
| GSE28412 |
22018139 |
download |
7004 |
Analyzing the metabolic stress response of recombinant Escherichia coli cultures expressing human interferon beta in high cell density fed batch cultures using time course transcriptomic data |
| GSE28795 |
22056927 |
download |
9926 |
Expression data from E. coli cells overexpressing either GreA or GreB in ppGpp0 cells in the dksA+ or dksA- background |
| GSE29424 |
21948837 |
download |
5921 |
Functional genomics study of endogenous free fatty acid overproduction in Escherichia coli |
| GSE30639 |
22645336 |
download |
8910 |
Evolution of gene expression during long term coexistence in a bacterial evolution experiment |
| GSE31333 |
16249312 |
download |
29958 |
NIA Neuroarray dehydration |
| GSE32561 |
22038610 |
download |
18815 |
Investigating the impact of heterologous expression of the Micrococcus luteus FabH on global transcription in Escherichia coli |
| GSE32562 |
22122981 |
download |
13089 |
Trimethoprim response in Escherichia coli in bacteriostatic and bactericidal conditions |
| GSE33147 |
16204189 |
download |
32077 |
Expression data from laboratory evolution of Escherichia coli on lactate or glycerol |
| GSE34023 |
22295907 |
download |
21682 |
Overexpression of BglJ and LeuO in Escherichia coli K12 |
| GSE35049 |
22389370 |
download |
41839 |
Analysis of ethanologenic E. coli strain GLBRCE1 during fermentation of alkaline-pretreated corn stover hydrolysate |
