| Network | Description | # Genes (Genome coverage) |
# Links |
|---|---|---|---|
| HumanNet-XN | Fully extended functional gene network | 17,929 (95.3%) | 525,537 |
| HumanNet-XC | Functional gene network extended by co-citation | 17,790 (94.6%) | 424,501 |
| HumanNet-XI | Functional gene network extended by interolog | 17,303 (92.0%) | 418,525 |
| HumanNet-FN | Functional gene network | 17,247 (91.7%) | 371,502 |
| HumanNet-CF | Co-functional network | 14,739 (78.4%) | 252,590 |
| HumanNet-PI | Protein-protein interaction network | 15,352 (81.6%) | 158,499 |
| Network | Description | # Genes | # Links |
|---|---|---|---|
| CC | Co-functional links by co-citation | 10,303 | 72,819 |
| CE | Co-functional links by co-essentiality | 4,052 | 71,243 |
| CX | Co-functional links by co-expression | 6,658 | 29,481 |
| DB | Co-functional links by pathway database | 7,512 | 125,550 |
| DP | Co-functional links by protein domain profile associations | 9,454 | 45,958 |
| GN | Co-functional links by gene neighborhood | 2,403 | 24,862 |
| HT | Protein-protein interactions by high throughput assays | 12,641 | 78,627 |
| IL | Protein-protein interactions transferred from model organisms | 9,077 | 113,499 |
| LC | Literature-curated protein-protein interactions | 13,790 | 122,444 |
| PG | Co-functional links by phylogenetic profile associations | 1,552 | 10,888 |
| Network | Description | # Genes | # Links |
|---|---|---|---|
| CE-HT | High-throughput PPI in C. elegans | 868 | 1,041 |
| CE-LC | Literature-curated PPI in C. elegans | 575 | 860 |
| DM-HT | High-throughput PPI in D. melanogaster | 3,912 | 6,383 |
| DM-LC | Literature-curated PPI in D. melanogaster | 1,299 | 3,196 |
| DR-LC | Literature-curated PPI in D. rerio | 169 | 179 |
| MM-LC | Literature-curated PPI in M. musculus | 5,120 | 11,336 |
| SC-GT | Genetic interactions in S. cerevisiae | 2,671 | 44,222 |
| SC-HT | High-throughput PPI in S. cerevisiae | 2,326 | 39,536 |
| SC-LC | Literature-curated PPI in S. cerevisiae | 2,580 | 23,974 |
| SC-TS | Protein 3D structure based interactions in S. cerevisiae | 857 | 6,005 |
| CLF-LC | Literature-curated PPI in C. l. familiaris | 9 | 5 |
| BT-LC | Literature-curated PPI in B. taurus | 275 | 2,230 |
| RN-LC | Literature-curated PPI in Rattus norvegicus | 1,129 | 5,135 |
| GG-LC | Literature-curated PPI in Gallus gallus | 123 | 1,000 |
