| Code | Description | #genes | #links |
|---|
| PA-CC | Inferred links by co-citation across PubMed central articles for P.aeruginosa biology | 2,673 | 72,947 |
| PA-CX | Inferred links by co-expression across gene expression profiles of GEO database | 4,271 | 49,483 |
| PA-DP | Inferred links by correlation of protein domain profiles of P.aeruginosa coding genes | 2,589 | 5,000 |
| PA-GN | Inferred links by neighborhood of P.aeruginosa orthologs in bacterial genomes | 4,022 | 32,000 |
| PA-PG | Inferred links by correlation of phylogenetic profiles of P.aeruginosa genes | 2,031 | 31,496 |
| EC-CC | Associalogs of inferred links by co-citation across PubMed central articles for E.coli biology | 1,403 | 26,484 |
| EC-CX | Associalogs of inferred links by co-expression across gene expression profiles of GEO database | 1,999 | 37,483 |
| BA-HT | Associalogs of bacterial protein-protein interactions derived from high-throughput analysis | 1,768 | 12,361 |
| BA-LC | Associalogs of bacterial protein-protein interactions derived from literature curation of small-scale analysis | 626 | 893 |
| DB/data set | Reference(PMID) | Edge list download | #link | Experiment description |
|---|
| GSE4026 | 16621831 | download | 4,485 | A Distinct QscR Regulon in the Pseudomonas aeruginosa Quorum Sensing Circuit |
| GSE6741 | 17581126 | download | 5,478 | Responses of Pseudomonas aeruginosa to low oxygen |
| GSE6769 | 19643762 | download | 11,461 | Expression data from Pseudomonas aeruginosa (wild type and lasRrhlR mutant strains) exposed to human neutrophils |
| GSE7704 | 17724070 | download | 10,480 | In vivo evidence of Pseudomonas aeruginosa nutrient acquisition and pathogenesis in the cystic fibrosis lung |
| GSE8953 | 18644954 | download | 12,512 | Investigations of the effects of subMIC antibiotics on the Pseudomonas aeruginosa transcriptome |
| GSE12207 | 19246740 | download | 9,448 | Biofilms and type III secretion are not mutually exclusive in Pseudomonas aeruginosa |
| GSE21966 | 20856824 | download | 32,508 | Transcriptional profiling of Pseudomonas aeruginosa isolated from 3 individuals with cystic fibrosis over time |
| GSE25481 | 21930755 | download | 10,475 | Analysis of Pseudomonas aeruginosa evolving in the cystic fibrosis lung uncovers limited evidence that mutator lineages are more genetically variable than non-mutator lineages |
| GSE28081 | NA | download | 22,513 | Expression pattern of Pseudomonas aeruginosa biofilm-residing bacteria exposed to gentamicin or surface acoustic waves or gentamicin and surface acoustic waves combined |
| GSE31227 | 21851621 | download | 12,483 | Expression data of Pseudomonas aeruginosa isolates from Cystic Fibrosis patients in Denmark |
| GSE33188 | 22479525 | download | 2,477 | Expression data from Pseudomonas aeruginosa PAO1 and its isogenic ampR mutant in the presence and absence of sub-MIC β-lactam exposure |
| GSE33245 | NA | download | 5,466 | Novel targets of the CbrAB/Crc carbon catabolite control system revealed by transcript abundance in Pseudomonas aeruginosa |
