StaphNet: An integrated functional gene network model for Staphylococcus aureus.

Integrated network # of genes # of links
StaphNet 2,674 genes 60,513 links


Gold Standard: Positive functional gene associations

Gold standard set # of genes # of links
StaphNet_GS 930 genes 20,258 links


Seven component networks of StaphNet

Code Description # of genes # of links
SA-CX Functional associations inferred by co-expression pattern of genes across microarray and RNA-seq experiments. 2,539 24,031
SA-GN Functional associations inferred from the proximity of orthologous genes in the prokaryotic genomes. 2,031 21,803
SA-DP Functional associations inferred from the similarity of functionally important domain. 1,448 7,026
SA-HT Functional association derived from previous high-throughput protein pull-down assay. 290 4,130
SA-PG Functional association inferred from the similarity of genes’ conservation pattern across various genome. 910 8,407
EC-CX Network derived from the E. coli co-expression network. (from EcoliNet) 754 5,232
EC-HT Network derived from the E. coli high-throughput protein interaction network. (from EcoliNet) 479 2,626


[+] Component Coexpression Networks



   

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