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[WormNet: a network by integration of all data-type-specific networks (CE-CX, CE-GN, CE-GT, CE-HT, CE-LC, CE-PG, DM-CX, DM-HT, DM-LC, DR-CX, HS-CX, HS-HT, HS-LC, SC-CC, SC-CX, SC-HT, SC-LC, SC-TS) by modified Bayesian integration.

WormNet v.3
Edge list download16347 genes762822 links

[Gold standard data of positive gene functional associations]

WormNet v.3-GS
Edge list download2445 genes78739 links

[Integrated network for each of data type]

data typeorganismEdge list download#linksDescription
CE-CXworm(C.elegans)download245952Inferred links by co-expression pattern of two genes (based on high-dimensional gene expression data)
CE-GNworm(C.elegans)download53683Inferred links by gene neighbourhoods of bacterial and archaeal orthologs
CE-GTworm(C.elegans)download3239Inferred links by genetic interactions
CE-HTworm(C.elegans)download2985Inferred Links by high-throughput protein-protein interactions
CE-LCworm(C.elegans)download1648Inferred Links by small/medium-scale protein-protein interactions (collected from protein-protein interaction data bases)
CE-PGworm(C.elegans)download47754Inferred links by similar phylogenetic profiles
DM-CXfly(D.melanogaster)download76717Inferred Links by co-expression pattern of two genes (based on high-dimensional gene expression data)
DM-HTfly(D.melanogaster)download4660Inferred Links by high-throughput protein-protein interactions
DM-LCfly(D.melanogaster)download1129Inferred Links by small/medium-scale protein-protein interactions (collected from protein-protein interaction data bases)
DR-CXzebrafish(D.rerio)download84940Inferred Links by co-expression pattern of two genes (based on high-dimensional gene expression data)
HS-CXhuman(H.sapiens)download108818Inferred Links by co-expression pattern of two genes (based on high-dimensional gene expression data)
HS-HThuman(H.sapiens)download13691Inferred Links by high-throughput protein-protein interactions
HS-LChuman(H.sapiens)download39484Inferred Links by small/medium-scale protein-protein interactions (collected from protein-protein interaction data bases)
SC-CCyeast(S.cerevisiae)download34879Inferred links by co-citation
SC-CXyeast(S.cerevisiae)download65174Inferred Links by co-expression pattern of two genes (based on high-dimensional gene expression data)
SC-GTyeast(S.cerevisiae)download33987Inferred links by genetic interactions
SC-HTyeast(S.cerevisiae)download63027Inferred Links by high-throughput protein-protein interactions
SC-LCyeast(S.cerevisiae)download20452Inferred Links by small/medium-scale protein-protein interactions (collected from protein-protein interaction data bases)
SC-TSyeast(S.cerevisiae)download3959Inferred Links by protein tertiary structure
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